How to hide a structure revision efficiently ?

How to "sell" the same data twice to the community ?





The Timeline


Received
Accepted
Published

Publication
Corresponding Author

Title

Remarks


All Searches of the CAS-Registry File
were performed on 2018-02-26

Received: 2005-01-11
On Web: 2005-02-11
Org.Lett., 7, 1117 - 1119 (2005)

Christian V. Stevens
Straightforward Ring Expansion of Pyroglutamates to Perhydro-1,3-diazepine-2,4-diones
  • Supplementary Material available: "All carbon spectra of the new compounds synthesized and their complete characterization."

  • 13C-NMR spectral data of compounds numbered as "Table 1, entry 1 to 8" are given

  • All 8 compounds shown are [1,3]-diazepin-derivatives containing a 7-membered cyclic system

  • 16 Substances described; 8 of them contain a 7-membered ring system

  • Structural overlap: 4 (ChemComm) + 8 (EurJOrgChem)
Received: 2005-06-20
Accepted: 2005-07-14
On Web: 2005-08-04
Chem.Commun., 2005, 4477 - 4478


Christian V. Stevens
Synthesis of 1,3-dioxo-hexahydropyrido[1,2-c][1,3]diazepine carboxylates, a new bicyclic skeleton formed by ring expansion-RCM methodology
  • "1,3-Diazepan- 2,4-diones, or perhydro-1,3-diazepine-2,4-diones, however, are rare and no straightforward synthetic method for their preparation existed until recently we discovered that this interesting skeleton can be prepared in one step by intramolecular transamidation of pyroglutamates after reaction with isocyanates" [Publication: Org.Lett.,7,1117 - 1119(2005)

  • 43 Substances described; 21 out of them contain a 7-membered ring system

  • Structural overlap: 4 (OrgLett) + 18 (EurJOrgChem)
On Web: 2005-10-14
Org.Lett., 7, 5347 (2005)

Christian V. Stevens
Additions and Correction
  • "The incorrect product was reported in this paper. X-ray analysis after publication shows that the products are not perhydro-1,3-diazepine-2,4-diones, but are hydantoins which were formed by a ring-closing-ring-opening sequence and which have almost identical NMR spectra."

  • "A paper is in preparation stating this misinterpretation and proving the structure of the hydantoins by X-ray analysis."
On Web: 2005-12-15
Chem.Commun., 2005, 4477 - 4478
Additions and Correction
  • "An incorrect product was reported in this article. After publication, X-ray analysis showed that the products formed by reaction of pyroglutamates 1 with isocyanates are not perhydro-1,3-diazepine-2,4-diones 2, but are hydantoins 3 which are formed by a ring closing-ring opening sequence and which have almost identical NMR spectra. As a consequence, the RCM products synthesised (Scheme 3) are in fact bicyclic hydantoin derivatives 4."

  • "A full paper is in preparation stating this misinterpretation and proving the structure of the hydantoins by X-ray analysis."
Received: 2006-01-20
On Web: 2006-04-03
Eur. J. Org. Chem., 2006, 2649-2660

Christan V. Stevens
The Pyroglutamate Hydantoin Rearrangement

 
Intermediate Summary
 


  • A reaction didn't work as expected
  • The spectrum interpretation was in error
  • The authors recognized this wrong structure elucidation
  • In both journals a correction has been published
  • Within these corrections an upcoming publication is announced proving the new structure proposals (hydantoins instead of perhydro-1,3-diazepine-2,4-diones) proven by X-ray analysis
  • From the timeline given above it can be deduced that this error was known to the community on October 14th, 2005; second revision was published on December 15th, 2005

 
Till Dec 15th, 2005: Errors might happen - perfect error handling
 


 
What can be found afterwards in the promised paper, obviously Eur. J. Org. Chem., 2006, 2649-2660
 




Now we start analyzing how these publications are cited in the literature

All Searches of the CAS-Registry File using SciFinder were performed on 2018-02-26

Org.Lett.,7,1117 - 1119(2005)
7 citations
2 citations by C. V. Stevens
  • Chem.Commun., 2005, 4477 - 4478 / Paper announced to be corrected

  • J. Org. Chem., 71, 3863-3868 (2006) / Citation (25) - only with repect to an experimental detail

  • The above-mentioned JOC-paper has been received on 2006-02-22, at this time the necessity for a structure revision was already known and the EuJOC-paper - showing hydantoines instead of diazepinediones - was submitted 4 weeks before !

  • The following statement in this paper is very interesting: "Recently, we described the pyroglutamate-hydantoin rearrangement.(Eur.J.Org.Chem.,in press) It was found that treating pyroglutamates 3 with NaH in the presence of isocyanates or isothiocyanates in THF produces hydantoins 4 in high yield via a ring-closing-ring-opening sequence."

  • The ring expansion from Pyroglutamates to 1,3-diazepin-derivatives is now a pyroglutamate-hydantoin rearrangement published in Eur. J. Org. Chem., 2006, 2649-2660 Let's analyze this publication below
Correction of
Org. Lett., 7, 1117 - 1119 (2005)
1 citation
0 citations by C. V. Stevens
Chem.Commun., 2005, 4477 - 4478
9 citations
0 citations by C. V. Stevens
Eur. J. Org. Chem., 2006, 2649-2660
19 citations
2 citations by C. V. Stevens



 
Comparison of 13C-NMR Data
 


  • Assigned lines as given in the publication are superimposed by a green rectangle

  • Ambigiously assigned lines as given in the publication are superimposed by a yellow rectangle

  • Ambigiously assigned lines are assigned to a specific carbon by us during data-input, because of slightly different information (e.g. Car versus Co,m)
    slightly different assignments in the display may be obtained - nevertheless the peaklist remains identical and the exchange-groups are kept as given in the publication

CSEARCH: UWLU-062227
Compound "Table 1 / Entry 1"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043579
Compound 9A
Eur.J.Org.Chem.,2006,2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Identical melting point

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062228
Compound "Table 1 / Entry 2"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043580
Compound 9B
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062229
Compound "Table 1 / Entry 3"
Org.Lett., 7, 1117 - 1119 (2005)

8 aromatic lines expected; 4 given
Melting point: 167oC

CSEARCH: UWLU-043581
Compound 9C
Eur.J.Org.Chem., 2006, 2649-2660

8 aromatic lines expected; 8 given
Melting point: 157oC

Schematic spectra

  • Identical 1H-NMR data

  • Slightly different 13C-NMR data - see header

  • Identical IR-data

  • Melting point different - see header

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062230
Compound "Table 1 / Entry 4"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043582
Compound 9D
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Identical melting point

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062231
Compound "Table 1 / Entry 5"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043583
Compound 9E
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Identical melting point

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062232
Compound "Table 1 / Entry 6"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043584
Compound 9F
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062233
Compound "Table 1 / Entry 7"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043585
Compound 9G
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-062234
Compound "Table 1 / Entry 8"
Org.Lett., 7, 1117 - 1119 (2005)

CSEARCH: UWLU-043586
Compound 9H
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Identical melting point

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100153
ETHYL-4-ALLYL-2,7-DIOXO-1-PROPYL-1,3-DIAZEPANE-4-CARBOXYLATE
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043587
Compound 13A
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100152
ETHYL-4-ALLYL-2,7-DIOXO-1-PHENYL-1,3-DIAZEPANE-4-CARBOXYLATE
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043588
Compound 13B
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100154
ETHYL-4-ALLYL-2,7-DIOXO-1-BENZYL-1,3-DIAZEPANE-4-CARBOXYLATE
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043589
Compound 13C
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100156
ETHYL-4-[2-CHLOROPROP-2-ENYL]-2,7-DIOXO-1-PROPYL-1,3-DIAZEPANE-4-CARBOXYLATE
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043590
Compound 13D
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100155
ETHYL-4-[2-METHYLPROP-2-ENYL]-2,7-DIOXO-1-PROPYL-1,3-DIAZEPANE-4-CARBOXYLATE
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043591
Compound 13E
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100157
Ethyl 3,4-diallyl-2,7-dioxo-1-propyl-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043594
Compound 14A
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100158
Ethyl 3,4-diallyl-2,7-dioxo-1-phenyl-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043595
Compound 14B
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100160
Ethyl 4-allyl-1-benzyl-3-(2-chloroprop-2-enyl)-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043596
Compound 14C
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100159
Ethyl 4-allyl-3-(2-methylprop-2-enyl)-1-phenyl-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043597
Compound 14D
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100162
Ethyl 4-allyl-1-benzyl-3-(2-chloroprop-2-enyl)-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043598
Compound 14E
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100161
Ethyl-4-allyl-1-benzyl-3-[2-(ethoxycarbonyl)prop-2-enyl]-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043599
Compound 14F
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Chemical shift values are always sorted - both peaklists show a sequence of 2.60 / 2.52 / 4.02-4.16 ppm

  • Identical 13C-NMR data

  • In both 13C-NMR data sets 1 signal is missing - 2 olefinic CH2 in structure; only 1 signal is given

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100164
Ethyl 3-allyl-4-(2-chloroprop-2-enyl)-1-propyl-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043600
Compound 14G
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100163
Ethyl 3-allyl-4-(2-chloroprop-2-enyl)-1-propyl-2,7-dioxo-1,3-diazepane-4-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043601
Compound 14H
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100167
Ethyl-1,3-dioxo-2-propyl-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043602
Compound 15A
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100166
Ethyl-1,3-dioxo-2-phenyl-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043603
Compound 15B
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100171
Ethyl 2-benzyl-8-chloro-1,3-dioxo-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)- carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043604
Compound 15C
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100165
Ethyl 8-methyl-1,3-dioxo-2-phenyl-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043605
Compound 15D
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100169
Ethyl 2-benzyl-8-(chloromethyl)-1,3-dioxo-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)-carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-43606
Compound 15E
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100168
Diethyl 2-benzyl-1,3-dioxo-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a,8(1H)-dicarboxylate
Chem.Commun., 2005, 4477 - 4478

"Instead of the second generation GrubbsTM catalyst, the second generation Hoveyda-GrubbsTM catalyst was used for this reaction"

"Chromatography: first Hex/EtOAc (3/1) untill Rf = 0.26, then strip with EtOAc + 5% CH2Cl2"

CSEARCH: UWLU-043607
Compound 15F
Eur.J.Org.Chem., 2006, 2649-2660


"Instead of the second generation GrubbsTM catalyst, the second generation Hoveyda-GrubbsTM catalyst is used for this reaction"

"Chromatography: first Hex/EtOAc (3:1) until Rf = 0.26, then strip with EtOAc + 5 % CH2Cl2"

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100172
Ethyl 7-chloro-1,3-dioxo-2-propyl-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)- carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043608
Compound 15G
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra

  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  

CSEARCH: UWLU-100170
Ethyl 7-methyl-1,3-dioxo-2-propyl-2,3,4,5,6,9-hexahydropyrido[1,2-c][1,3]diazepine-5a(1H)- carboxylate
Chem.Commun., 2005, 4477 - 4478

CSEARCH: UWLU-043609
Compound 15H
Eur.J.Org.Chem., 2006, 2649-2660

Schematic spectra


  • Identical 1H-NMR data

  • Identical 13C-NMR data

  • Identical IR-data

  • Structure revision

  • Original literature not cited  



 
My Summary and Conclusion
 




 
A few facts summarized by an (to me unknown) external expert selected by EuJOC
 

  External Expert

  My opinion

  • Analyzed the original spectra including HMBC provided by Prof. Stevens
  • No hint for misinterpretation of the spectra
  • I was always convinced that the distinction between these 2 classes of compounds using NMR-data is an extremely difficult question
  • Both proposals fit very well the published C-NMR data, which have been checked very carefully when we added them into the CSEARCH-database - no error recognized by us during data input (valid for all 3 papers)
  • The error made can happen to everybody
  • I fully agree - never complaint about this
  • An upcoming paper is announced in both corrections clarifying this misinterpretation
  • There is neither a citation of the previous work nor a hint given in the text in the EuJOC-paper
  • I fully agree - this is my complaint
  • Five compounds checked in detail - identical spectral data are given
  • The arguments used to prove the structure of the diazepines are repeated to prove the structures of the hydantoins
  • I fully agree - this is my complaint

 
My Impression: A well hidden structure revision, but not good enough
to avoid detection by CSEARCH
Only detectable when the data of all 3 involved papers are electronically available
 


How to find this type of well-hidden structure revisions ?

Search for identical spectra associated with different compounds
published by at least one common author in different journals.

This example shows the necessity of automatic peer-reviewing of experimental data and
the urgent need of public domain spectral repositories.



 
Statement from Prof. Stevens
 





Additions and Corrections: Eur.J.Org.Chem.




Page written by: Wolfgang Robien
Wolfgang.Robien(-at-)c13nmr.at
This is my opinion and does not necessarily reflect the opinion of the University of Vienna or its representatives

Page written on: Feb 26th - Feb 28th, 2018
Page online since (password-protected): Mar 8th, 2018
Page online since (public): Jun 22th, 2018
Last modification: Jun 20th, 2018

Page optimized for a screen-resolution of 1920x1080



History of this webpage


Date

Activity & Remarks


  Feb 26th, 2018  

Calculations performed - first part of webpage written  

  Feb 26th, 2018  

CAS-Searches using SCIFINDER performed

  Feb 27th, 2018  

Page continued; Pictures inserted

  Feb 28th, 2018  

Page finished

  Mar 1st, 2018  

Impressum & Table showing History added

  Mar 5th, 2018  

Final Layout

  Mar 5th, 2018  

Spectral data checked manually

  Mar 5th, 2018  

Summary and Conclusion added

  Mar 8th, 2018  

Final layout & upload to server

  Mar 8th, 2018  

On server: This webpage is password-protected


  FRI, Mar 9th, 2018 / 10:25 (CET)  

Information about this webpage send to the Editorial Offices of "Organic Letters", "Chemical Communications" and "European Journal of Organic Chemistry"


  MON, Mar 12th, 2018 / 16:03 (CET)  

Response from "European Journal of Organic Chemistry" received

  MON, Mar 12th, 2018 / 16:36 (CET)  

Response from "Chemical Communications" received

  WED, Mar 14th, 2018 / 17:59 (CET)  

Response from "Organic Letters" received


All three Editorial Offices contacted the author and stated a positive response
from the author to clarify this situation


  THU, Apr 12th, 2018 / 16:45 (CET)  

European Journal of Organic Chemistry:
Webpage will be peer-reviewed

  SUN, Jun 10th, 2018 / 12:42 (CET)  

European Journal of Organic Chemistry:
Report from reviewer received

  TUE, Jun 19th, 2018 / 14:16 (CET)  

Statement from Prof. Stevens received
(via Editorial Office - EuJOC)

  TUE, Jun 19th, 2018 / 21:46 (CET)  

Statement from Prof. Stevens directly received

  TUE, Jun 19th, 2018  

It is agreed by all involved parties to publish a common statement as soon as possible in the "European Journal of Organic Chemistry"
Link will be added here when available

  WED, Jun 20th, 2018  

Statement from Prof. Stevens added
Final improvements and layout of webpage done
Most decisive facts from the reviewer report added and commented


  FRI, Jun 22nd, 2018 / 12:00 (CET)  

Password-protection disabled
Webpage linked and published